1I3E Oxygen Storage Transport date Feb 15, 2001
title Human Azido-Met Hemoglobin Bart'S (Gamma4)
authors R.D.Kidd, H.M.Baker, A.J.Mathews, T.Brittain, E.N.Baker
compound source
Molecule: Hemoglobin Gamma Chains
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbg1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Gsy112
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prmae389
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.541 81.625 53.036 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand AZI, HEM enzyme
related structures by homologous chain: 1KD2, 1O1M
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


  • Primary referenceOligomerization and ligand binding in a homotetrameric hemoglobin: two high-resolution crystal structures of hemoglobin Bart's (gamma(4)), a marker for alpha-thalassemia., Kidd RD, Baker HM, Mathews AJ, Brittain T, Baker EN, Protein Sci 2001 Sep;10(9):1739-49. PMID:11514664
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1i3e.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 1I3E
  • CSU: Contacts of Structural Units for 1I3E
  • Likely Quarternary Molecular Structure file(s) for 1I3E
  • Structure Factors (218 Kb)
  • Retrieve 1I3E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I3E from S2C, [Save to disk]
  • Re-refined 1i3e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I3E in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I3E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I3E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i3ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1i3eb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i3e_B] [1i3e] [1i3e_A]
  • SWISS-PROT database: [P69891]
  • Domain organization of [HBG1_HUMAN] by SWISSPFAM
  • Other resources with information on 1I3E
  • Community annotation for 1I3E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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