1O1M Oxygen Storage Transport date Nov 17, 2002
title Deoxy Hemoglobin (A-Glyglygly-C:V1m,L29f,H58q B,D:V1m,V67w)
authors E.A.Brucker
compound source
Molecule: Hemoglobin Alpha Chain
Chain: A
Synonym: Deoxyhemoglobin Alpha Chain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hemoglobin Beta Chain
Chain: B, D
Synonym: Deoxyhemoglobin Beta Chain
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.481 83.642 53.516 90.00 98.99 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand HEM enzyme
related structures by homologous chain: 1I3E, 1K0Y, 1QXE
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceA human recombinant haemoglobin designed for use as a blood substitute., Looker D, Abbott-Brown D, Cozart P, Durfee S, Hoffman S, Mathews AJ, Miller-Roehrich J, Shoemaker S, Trimble S, Fermi G, et al., Nature 1992 Mar 19;356(6366):258-60. PMID:1552945
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1o1m.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 1O1M
  • CSU: Contacts of Structural Units for 1O1M
  • Likely Quarternary Molecular Structure file(s) for 1O1M
  • Structure Factors (628 Kb)
  • Retrieve 1O1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O1M from S2C, [Save to disk]
  • Re-refined 1o1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O1M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O1M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o1ma1, region A:1-141 [Jmol] [rasmolscript] [script source]
        - Domain d1o1ma2, region A:145-285 [Jmol] [rasmolscript] [script source]
        - Domain d1o1mb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1o1md_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o1m_B] [1o1m_D] [1o1m_A] [1o1m]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1O1M
  • Community annotation for 1O1M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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