1II4 Growth Factor Growth Factor Receptor date Apr 20, 2001
title Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2
authors O.A.Ibrahimi, A.V.Eliseenkova, A.N.Plotnikov, D.M.Ornitz, M.Mohammadi
compound source
Molecule: Heparin-Binding Growth Factor 2
Chain: A, B, C, D
Synonym: Fgf2, Hbgf-2, Basic Fibroblast Growth Factor, Bfgf;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

Molecule: Fibroblast Growth Factor Receptor 2
Chain: E, F, G, H
Fragment: Extracellular Ligand Binding Domain Consisting Of Ig-Like Domains II (D2) And III (D3), Residues 147-366;
Synonym: Fgfr2, Keratinocyte Growth Factor Receptor
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 1
R_factor 0.238 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.970 72.657 89.739 89.98 89.70 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1CVS, 1DJS, 2BFH
Primary referenceStructural basis for fibroblast growth factor receptor 2 activation in Apert syndrome., Ibrahimi OA, Eliseenkova AV, Plotnikov AN, Yu K, Ornitz DM, Mohammadi M, Proc Natl Acad Sci U S A 2001 Jun 19;98(13):7182-7. PMID:11390973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (1ii4.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1ii4.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (1ii4.pdb3.gz) 55 Kb
  • Biological Unit Coordinates (1ii4.pdb4.gz) 55 Kb
  • CSU: Contacts of Structural Units for 1II4
  • Likely Quarternary Molecular Structure file(s) for 1II4
  • Retrieve 1II4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1II4 from S2C, [Save to disk]
  • View 1II4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1II4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1II4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ii4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ii4b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ii4c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ii4d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ii4e1, region E:150-250 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4e2, region E:251-361 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4f1, region F:150-250 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4f2, region F:251-361 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4g1, region G:150-250 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4g2, region G:251-361 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4h1, region H:150-250 [Jmol] [rasmolscript] [script source]
        - Domain d1ii4h2, region H:251-361 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ii4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ii4_C] [1ii4_E] [1ii4_D] [1ii4_A] [1ii4_G] [1ii4_F] [1ii4] [1ii4_B] [1ii4_H]
  • SWISS-PROT database: [P09038] [P21802]
  • Domain organization of [FGF2_HUMAN] [FGFR2_HUMAN] by SWISSPFAM
  • Domains found in 1II4: [FGF] [IGc2 ] by SMART
  • Other resources with information on 1II4
  • Community annotation for 1II4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science