1DJS Hormone Growth Factor Receptor date Dec 03, 1999
title Ligand-Binding Portion Of Fibroblast Growth Factor Receptor Complex With Fgf1
authors D.J.Stauber, A.D.Digabriele, W.A.Hendrickson
compound source
Molecule: Protein (Fibroblast Growth Factor Receptor 2)
Chain: A
Fragment: Ig-Like Domains 2 And 3
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Fibroblast Growth Factor 1)
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.221 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.970 129.970 129.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE, SO4 enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1BAR, 1II4, 1IIL, 1QQL
Primary referenceStructural interactions of fibroblast growth factor receptor with its ligands., Stauber DJ, DiGabriele AD, Hendrickson WA, Proc Natl Acad Sci U S A 2000 Jan 4;97(1):49-54. PMID:10618369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1djs.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (1djs.pdb2.gz) 245 Kb
  • LPC: Ligand-Protein Contacts for 1DJS
  • CSU: Contacts of Structural Units for 1DJS
  • Likely Quarternary Molecular Structure file(s) for 1DJS
  • Retrieve 1DJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJS from S2C, [Save to disk]
  • View 1DJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DJS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1djsa1, region A:147-250 [Jmol] [rasmolscript] [script source]
        - Domain d1djsa2, region A:251-362 [Jmol] [rasmolscript] [script source]
        - Domain d1djsb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1djs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1djs_B] [1djs_A] [1djs]
  • SWISS-PROT database: [P05230] [P21802]
  • Domain organization of [FGF1_HUMAN] [FGFR2_HUMAN] by SWISSPFAM
  • Domains found in 1DJS: [FGF] [IGc2 ] by SMART
  • Alignments of the sequence of 1DJS with the sequences similar proteins can be viewed for 1DJS's classification [FGF1_HUMAN] [FGFR2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FGF1_HUMAN] [FGFR2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1DJS
  • Community annotation for 1DJS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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