1II8	Crystal structure of the P. furiosus Rad50 ATPase domain	date
authors	Hopfner, K.P., Karcher, A., Craig, L., Woo, T.T., Carney, J.P., Tainer, J.A.
compound		source
symmetry		R_factor R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.02
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase., Hopfner KP, Karcher A, Craig L, Woo TT, Carney JP, Tainer JA, Cell 2001 May 18;105(4):473-85. PMID:11371344

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1ii8.pdb1.gz) 63 Kb Biological Unit Coordinates (1ii8.pdb2.gz) 124 Kb LPC: Ligand-Protein Contacts for 1II8 CSU: Contacts of Structural Units for 1II8 Likely Quarternary Molecular Structure file(s) for 1II8 Retrieve 1II8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1II8 from S2C, [Save to disk]

View 1II8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1II8

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1II8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ii8.1, region A:,B [Jmol] [rasmolscript] [script source] Fold representative 1ii8 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ii8_B] [1ii8_A] [1ii8] SWISS-PROT database: [P58301] Domain organization of [RAD50_PYRFU] by SWISSPFAM

Other resources with information on 1II8

Community annotation for 1II8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1II8 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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