1IJB Blood Clotting date Apr 25, 2001
title The Von Willebrand Factor Mutant (I546v) A1 Domain
authors K.Fukuda, T.A.Doggett, L.A.Bankston, M.A.Cruz, T.G.Diacovo, R.C.Liddington
compound source
Molecule: Von Willebrand Factor
Chain: A
Fragment: A1 Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.188 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.010 86.010 68.502 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1FNS
Primary referenceStructural basis of von Willebrand factor activation by the snake toxin botrocetin., Fukuda K, Doggett TA, Bankston LA, Cruz MA, Diacovo TG, Liddington RC, Structure (Camb) 2002 Jul;10(7):943-50. PMID:12121649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1ijb.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1IJB
  • Likely Quarternary Molecular Structure file(s) for 1IJB
  • Structure Factors (382 Kb)
  • Retrieve 1IJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IJB from S2C, [Save to disk]
  • Re-refined 1ijb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IJB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ijba_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ijb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ijb_A] [1ijb]
  • SWISS-PROT database: [P04275]
  • Domain organization of [VWF_HUMAN] by SWISSPFAM
  • Domain found in 1IJB: [VWA ] by SMART
  • Alignments of the sequence of 1IJB with the sequences similar proteins can be viewed for 1IJB's classification [VWF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [VWF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1IJB
  • Community annotation for 1IJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science