1IKM Cytokine (Chemotactic) date Aug 03, 1995
title Nmr Study Of Monomeric Human Interleukin-8 (30 Structures)
authors K.Rajarathnam, I.Clark-Lewis, B.D.Sykes
compound source
Molecule: Human Interleukin-8 (Monomeric)
Chain: A
Synonym: Nap-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand MLE enzyme
related structures by homologous chain: 1IKL, 2IL8
  • cytokine activity
  • calcium-mediated signaling
  • intracellular signal transdu...

  • Primary reference1H NMR solution structure of an active monomeric interleukin-8., Rajarathnam K, Clark-Lewis I, Sykes BD, Biochemistry 1995 Oct 10;34(40):12983-90. PMID:7548056
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (664 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1IKM
  • CSU: Contacts of Structural Units for 1IKM
  • Original NMR restraints for 1IKM from PDB
  • Retrieve 1IKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IKM from S2C, [Save to disk]
  • View 1IKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IKM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IKM, from MSDmotif at EBI
  • Genome occurence of 1IKM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ikm__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ikm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ikm] [1ikm_A]
  • SWISS-PROT database: [P10145]
  • Domain organization of [IL8_HUMAN] by SWISSPFAM
  • Domain found in 1IKM: [SCY ] by SMART
  • Other resources with information on 1IKM
  • Community annotation for 1IKM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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