2IL8 Cytokine date Mar 08, 1990
title Three-Dimensional Structure Of Interleukin 8 In Solution
authors G.M.Clore
compound source
Molecule: Interleukin-8
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Potential
methodSolution NMR
related structures by homologous chain: 1IKM
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThree-dimensional structure of interleukin 8 in solution., Clore GM, Appella E, Yamada M, Matsushima K, Gronenborn AM, Biochemistry 1990 Feb 20;29(7):1689-96. PMID:2184886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1192 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2IL8
  • Original NMR restraints for 2IL8 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2IL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IL8 from S2C, [Save to disk]
  • View 2IL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IL8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IL8, from MSDmotif at EBI
  • Genome occurence of 2IL8's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2il8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2il8b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2il8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2il8_B] [2il8] [2il8_A]
  • SWISS-PROT database: [P10145]
  • Domain organization of [IL8_HUMAN] by SWISSPFAM
  • Domain found in 2IL8: [SCY ] by SMART
  • Alignments of the sequence of 2IL8 with the sequences similar proteins can be viewed for 2IL8's classification [IL8_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [IL8_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2IL8
  • Community annotation for 2IL8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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