1IRO Electron Transport date Dec 13, 1995
title Rubredoxin (Oxidized, Fe(III)) At 1.1 Angstroms Resolution
authors Z.Dauter, K.S.Wilson, L.C.Sieker, J.M.Moulis, J.Meyer
compound source
Molecule: Rubredoxin
Chain: A
Other_details: Oxidized, Fe(III)
Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
symmetry Space Group: H 3
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.040 64.040 32.510 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.10 Å
ligand FE enzyme
related structures by homologous chain: 1IRN, 8RXN
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceZinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein., Dauter Z, Wilson KS, Sieker LC, Moulis JM, Meyer J, Proc Natl Acad Sci U S A 1996 Aug 20;93(17):8836-40. PMID:8799113
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1iro.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1IRO
  • CSU: Contacts of Structural Units for 1IRO
  • Likely Quarternary Molecular Structure file(s) for 1IRO
  • Structure Factors (305 Kb)
  • Retrieve 1IRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IRO from S2C, [Save to disk]
  • Re-refined 1iro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IRO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IRO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1IRO from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IRO, from MSDmotif at EBI
  • Genome occurence of 1IRO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iro__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1iro from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iro] [1iro_A]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
  • Other resources with information on 1IRO
  • Community annotation for 1IRO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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