8RXN Electron Transport(Iron) date Aug 26, 1991
title Refinement Of Rubredoxin From Desulfovibrio Vulgaris At 1.0 Angstroms With And Without Restraints
authors Z.Dauter, L.Sieker, K.Wilson
compound source
Molecule: Rubredoxin
Chain: A
Engineered: Yes
Organism_scientific: Desulfovibrio Vulgaris
Organism_taxid: 881
symmetry Space Group: P 1 21 1
length a length b length c angle alpha angle beta angle gamma
19.970 41.450 24.410 90.00 108.30 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand FE, SO4 enzyme
related structures by homologous chain: 1BQ8, 1BRF, 1IRO
  • electron transfer activity

  • Primary referenceRefinement of rubredoxin from Desulfovibrio vulgaris at 1.0 A with and without restraints., Dauter Z, Sieker LC, Wilson KS, Acta Crystallogr B 1992 Feb 1;48 ( Pt 1):42-59. PMID:1616692
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (8rxn.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 8RXN
  • CSU: Contacts of Structural Units for 8RXN
  • Likely Quarternary Molecular Structure file(s) for 8RXN
  • Structure Factors (243 Kb)
  • Retrieve 8RXN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8RXN from S2C, [Save to disk]
  • Re-refined 8rxn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 8RXN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8RXN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 8RXN from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 8RXN, from MSDmotif at EBI
  • Genome occurence of 8RXN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d8rxna_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 8rxn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8rxn_A] [8rxn]
  • SWISS-PROT database: [P00269]
  • Domain organization of [RUBR_DESVH] by SWISSPFAM
  • Other resources with information on 8RXN
  • Community annotation for 8RXN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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