1J0B Lyase date Nov 12, 2002
title Crystal Structure Analysis Of The Acc Deaminase Homologue Co With Inhibitor
authors A.Fujino, T.Ose, M.Honma, M.Yao, I.Tanaka
compound source
Molecule: 1-Aminocyclopropane-1-Carboxylate Deaminase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Synonym: Acc, Acc Deaminase
Ec: 4.1.99.4
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1
R_factor 0.291 R_Free 0.342
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.870 147.280 149.070 73.18 90.11 68.49
method X-Ray Diffractionresolution 2.70 Å
ligand 5PA enzyme Lyase E.C.4.1.99.4 BRENDA
related structures by homologous chain: 1J0A
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceStructural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii., Fujino A, Ose T, Yao M, Tokiwano T, Honma M, Watanabe N, Tanaka I, J Mol Biol 2004 Aug 20;341(4):999-1013. PMID:15328614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1224 Kb) [Save to disk]
  • Biological Unit Coordinates (1j0b.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (1j0b.pdb2.gz) 115 Kb
  • Biological Unit Coordinates (1j0b.pdb3.gz) 115 Kb
  • Biological Unit Coordinates (1j0b.pdb4.gz) 115 Kb
  • Biological Unit Coordinates (1j0b.pdb5.gz) 114 Kb
  • Biological Unit Coordinates (1j0b.pdb6.gz) 114 Kb
  • Biological Unit Coordinates (1j0b.pdb7.gz) 115 Kb
  • Biological Unit Coordinates (1j0b.pdb8.gz) 114 Kb
  • Biological Unit Coordinates (1j0b.pdb9.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 1J0B
  • CSU: Contacts of Structural Units for 1J0B
  • Likely Quarternary Molecular Structure file(s) for 1J0B
  • Retrieve 1J0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J0B from S2C, [Save to disk]
  • View 1J0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J0B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J0B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j0ba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j0bb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j0bc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1j0bd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1j0be_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1j0bf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1j0bg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1j0bh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1j0bi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1j0bj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1j0bk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1j0bl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1j0bm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1j0bn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1j0bo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1j0bp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1j0bq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1j0br_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1j0bs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1j0bt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1j0bu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1j0bv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1j0bw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1j0bx_, region X [Jmol] [rasmolscript] [script source]
  • Fold representative 1j0b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j0b_H] [1j0b_X] [1j0b_W] [1j0b_N] [1j0b_F] [1j0b_J] [1j0b_M] [1j0b] [1j0b_R] [1j0b_A] [1j0b_K] [1j0b_G] [1j0b_V] [1j0b_C] [1j0b_P] [1j0b_U] [1j0b_T] [1j0b_O] [1j0b_I] [1j0b_Q] [1j0b_B] [1j0b_S] [1j0b_L] [1j0b_D] [1j0b_E]
  • SWISS-PROT database: [O57809]
  • Domain organization of [1A1D_PYRHO] by SWISSPFAM
  • Other resources with information on 1J0B
  • Community annotation for 1J0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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