1J19 Cell Adhesion date Dec 02, 2002
title Crystal Structure Of The Radxin Ferm Domain Complexed With T Cytoplasmic Peptide
authors K.Hamada, T.Shimizu, S.Yonemura, S.Tsukita, S.Tsukita, T.Hakoshim
compound source
Molecule: Radixin
Chain: A
Fragment: N-Terminal Domain, Ferm Domain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-3

Molecule: 16-Mer Peptide From Intercellular Adhesion Molecu
Chain: B
Synonym: Icam-2 Cytoplasmic Peptide, Icam-2 Cytoplasmic Tai
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-3
symmetry Space Group: P 31 2 1
R_factor 0.228 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.440 100.440 99.480 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1E5W, 1NI2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of adhesion-molecule recognition by ERM proteins revealed by the crystal structure of the radixin-ICAM-2 complex., Hamada K, Shimizu T, Yonemura S, Tsukita S, Tsukita S, Hakoshima T, EMBO J 2003 Feb 3;22(3):502-14. PMID:12554651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1j19.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 1J19
  • Likely Quarternary Molecular Structure file(s) for 1J19
  • Structure Factors (177 Kb)
  • Retrieve 1J19 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J19 from S2C, [Save to disk]
  • Re-refined 1j19 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J19 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J19
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J19, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j19a2, region A:199-317 [Jmol] [rasmolscript] [script source]
        - Domain d1j19a3, region A:2-87 [Jmol] [rasmolscript] [script source]
        - Domain d1j19a1, region A:88-198 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j19_A] [1j19_B] [1j19]
  • SWISS-PROT database: [P35330] [P26043]
  • Domain organization of [ICAM2_MOUSE] [RADI_MOUSE] by SWISSPFAM
  • Domains found in 1J19: [B41] [FERM_C ] by SMART
  • Other resources with information on 1J19
  • Community annotation for 1J19 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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