1J59	Gene Regulation Dna	date	Mar 01, 2002
title	Catabolite Gene Activator Protein (Cap)Dna Complex + Adenos Cyclic-Monophosphate
authors	G.Parkinson, C.Wilson, A.Gunasekera, Y.W.Ebright, R.H.Ebright, H.
compound		source
Molecule: 5'-D(Gpcpgpapapapapgptpgptpgpapc)-3 Chain: C, E Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Aptpaptpgptpcpapcpapcptptptpt 3'; Chain: D, F Engineered: Yes		Synthetic: Yes
Molecule: Catabolite Gene Activator Protein (Cap) Chain: A, B Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.199 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.990 152.800 76.060 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CMP BindingDB	enzyme
note	1J59 (Molecule of the Month:pdb48)supersedes 1BER
related structures	by homologous chain: 1RUN, 2CGP
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface., Parkinson G, Wilson C, Gunasekera A, Ebright YW, Ebright RE, Berman HM, J Mol Biol 1996 Jul 19;260(3):395-408. PMID:8757802

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1j59.pdb1.gz) 94 Kb LPC: Ligand-Protein Contacts for 1J59 CSU: Contacts of Structural Units for 1J59 Likely Quarternary Molecular Structure file(s) for 1J59 Structure Factors (190 Kb) Retrieve 1J59 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J59 from S2C, [Save to disk] Re-refined 1j59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J59 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1J59

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J59, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j59a1, region A:138-207 [Jmol] [rasmolscript] [script source]     - Domain d1j59a2, region A:9-137 [Jmol] [rasmolscript] [script source]     - Domain d1j59b1, region B:138-205 [Jmol] [rasmolscript] [script source]     - Domain d1j59b2, region B:9-137 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j59_D] [1j59_C] [1j59_F] [1j59] [1j59_A] [1j59_E] [1j59_B] SWISS-PROT database: [P0ACJ8] Domain organization of [CRP_ECOLI] by SWISSPFAM Domains found in 1J59: [HTH_CRP] [cNMP ] by SMART

Other resources with information on 1J59

Community annotation for 1J59 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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