1JDN Signaling Protein date Jun 14, 2001
title Crystal Structure Of Hormone Receptor
authors X.L.He, D.C.Chow, M.M.Martick, K.C.Garcia
compound source
Molecule: Atrial Natriuretic Peptide Clearance Receptor
Chain: A
Synonym: Npr-C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prmha3
symmetry Space Group: P 61 2 2
R_factor 0.243 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
217.189 217.189 130.793 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand BMA, CL, FUC, MAN, NAG, NDG enzyme
related structures by homologous chain: 1JDP

Primary referenceAllosteric activation of a spring-loaded natriuretic peptide receptor dimer by hormone., He Xl, Chow Dc, Martick MM, Garcia KC, Science 2001 Aug 31;293(5535):1657-62. PMID:11533490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdn.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 1JDN
  • CSU: Contacts of Structural Units for 1JDN
  • Likely Quarternary Molecular Structure file(s) for 1JDN
  • Retrieve 1JDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDN from S2C, [Save to disk]
  • View 1JDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JDN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JDN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdna_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jdn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdn_A] [1jdn]
  • SWISS-PROT database: [P17342]
  • Domain organization of [ANPRC_HUMAN] by SWISSPFAM
  • Other resources with information on 1JDN
  • Community annotation for 1JDN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1JDN from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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