1JH5	Immune System, Antitumor Protein	date	Jun 27, 2001
title	Crystal Structure Of Stall-1 Of Tnf Family Ligand
authors	Y.Liu, L.Xu, N.Opalka, H.B.Shu, G.Zhang
compound		source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1 Chain: A, B, C, D, E, F, G, H, I, J Fragment: Stall-1, Soluble Part Of Tall-1 Synonym: Tnf Family Ligand; Tnf-And Apol-Related Leukocyte Ligand 1; Tall-1; B Lymphocyte Stimulator; Blys; B Cell-Act Factor; Tumor Necrosis Factor (Ligand) Superfamily, Member Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63 2 2	R_factor 0.236 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 234.242 234.242 212.550 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
related structures	by homologous chain: 1OSG
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Crystal structure of sTALL-1 reveals a virus-like assembly of TNF family ligands., Liu Y, Xu L, Opalka N, Kappler J, Shu HB, Zhang G, Cell 2002 Feb 8;108(3):383-94. PMID:11853672

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (1jh5.pdb1.gz) 1319 Kb CSU: Contacts of Structural Units for 1JH5 Likely Quarternary Molecular Structure file(s) for 1JH5 Structure Factors (474 Kb) Retrieve 1JH5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JH5 from S2C, [Save to disk] Re-refined 1jh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JH5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JH5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JH5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jh5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jh5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jh5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1jh5d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1jh5e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1jh5f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1jh5g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1jh5h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1jh5i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1jh5j_, region J [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jh5_I] [1jh5_G] [1jh5_J] [1jh5_B] [1jh5_A] [1jh5_H] [1jh5_C] [1jh5_E] [1jh5] [1jh5_D] [1jh5_F] SWISS-PROT database: [Q9Y275] Domain organization of [TN13B_HUMAN] by SWISSPFAM Domain found in 1JH5: [TNF ] by SMART

Other resources with information on 1JH5

Community annotation for 1JH5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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