1JI7 Transcription date Jun 29, 2001
title Crystal Structure Of Tel Sam Polymer
authors C.A.Kim, M.L.Phillips, W.Kim, M.Gingery, H.H.Tran, M.A.Robinson, S.Faham, J.U.Bowie
compound source
Molecule: Ets-Related Protein Tel1
Chain: A, B, C
Fragment: Tel Sam Domain
Synonym: Transcription Factor Etv6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tel
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.865 52.678 58.701 90.00 113.90 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MSE, SO4 enzyme
note 1JI7 is a representative structure
related structures by homologous chain: 1LKY
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referencePolymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression., Kim CA, Phillips ML, Kim W, Gingery M, Tran HH, Robinson MA, Faham S, Bowie JU, EMBO J 2001 Aug 1;20(15):4173-82. PMID:11483520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1ji7.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1JI7
  • CSU: Contacts of Structural Units for 1JI7
  • Likely Quarternary Molecular Structure file(s) for 1JI7
  • Structure Factors (709 Kb)
  • Retrieve 1JI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JI7 from S2C, [Save to disk]
  • Re-refined 1ji7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JI7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JI7 1JI7A 1JI7B 1JI7C from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JI7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ji7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ji7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ji7c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1ji7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ji7_B] [1ji7_A] [1ji7] [1ji7_C]
  • SWISS-PROT database: [P41212]
  • Domain organization of [ETV6_HUMAN] by SWISSPFAM
  • Domain found in 1JI7: [SAM_PNT ] by SMART
  • Other resources with information on 1JI7
  • Community annotation for 1JI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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