1JI7 Transcription date Jun 29, 2001
title Crystal Structure Of Tel Sam Polymer
authors C.A.Kim, M.L.Phillips, W.Kim, M.Gingery, H.H.Tran, M.A.Robinson, S.Faham, J.U.Bowie
compound source
Molecule: Ets-Related Protein Tel1
Chain: A, B, C
Fragment: Tel Sam Domain
Synonym: Transcription Factor Etv6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tel
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.865 52.678 58.701 90.00 113.90 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MSE, SO4 enzyme
note 1JI7 is a representative structure
related structures by homologous chain: 1LKY
Primary referencePolymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression., Kim CA, Phillips ML, Kim W, Gingery M, Tran HH, Robinson MA, Faham S, Bowie JU, EMBO J 2001 Aug 1;20(15):4173-82. PMID:11483520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1ji7.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1JI7
  • CSU: Contacts of Structural Units for 1JI7
  • Likely Quarternary Molecular Structure file(s) for 1JI7
  • Structure Factors (709 Kb)
  • Retrieve 1JI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JI7 from S2C, [Save to disk]
  • Re-refined 1ji7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JI7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JI7 1JI7A 1JI7B 1JI7C from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JI7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ji7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ji7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ji7c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1ji7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ji7_B] [1ji7_A] [1ji7] [1ji7_C]
  • SWISS-PROT database: [P41212]
  • Domain organization of [ETV6_HUMAN] by SWISSPFAM
  • Domain found in 1JI7: [SAM_PNT ] by SMART
  • Other resources with information on 1JI7
  • Community annotation for 1JI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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