1LKY Transcription date Apr 26, 2002
title Structure Of The Wild-Type Tel-Sam Polymer
authors H.H.Tran, C.A.Kim, S.Faham, J.U.Bowie
compound source
Molecule: Transcription Factor Etv6
Chain: A, C, E
Fragment: Pointed Domain
Synonym: Tel Sam
Engineered: Yes
Mutation: Yes
Other_details: Mutant V80r
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Etv6
Chain: B, D, F
Fragment: Pointed Domain
Synonym: Tel Sam
Engineered: Yes
Mutation: Yes
Other_details: Mutant A61d

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.232 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.752 60.291 62.318 116.21 98.89 98.65
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
related structures by homologous chain: 1JI7
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceNative interface of the SAM domain polymer of TEL., Tran HH, Kim CA, Faham S, Siddall MC, Bowie JU, BMC Struct Biol 2002 Aug 22;2(1):5. PMID:12193272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1lky.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1lky.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (1lky.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (1lky.pdb4.gz) 84 Kb
  • Biological Unit Coordinates (1lky.pdb5.gz) 84 Kb
  • Biological Unit Coordinates (1lky.pdb6.gz) 83 Kb
  • Biological Unit Coordinates (1lky.pdb7.gz) 84 Kb
  • Biological Unit Coordinates (1lky.pdb8.gz) 84 Kb
  • Biological Unit Coordinates (1lky.pdb9.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1LKY
  • CSU: Contacts of Structural Units for 1LKY
  • Likely Quarternary Molecular Structure file(s) for 1LKY
  • Retrieve 1LKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LKY from S2C, [Save to disk]
  • View 1LKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LKY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LKY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lkya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lkyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1lkyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1lkyd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1lkye_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1lkyf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1lky from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lky_C] [1lky] [1lky_B] [1lky_D] [1lky_F] [1lky_A] [1lky_E]
  • SWISS-PROT database: [P41212]
  • Domain organization of [ETV6_HUMAN] by SWISSPFAM
  • Domain found in 1LKY: [SAM_PNT ] by SMART
  • Alignments of the sequence of 1LKY with the sequences similar proteins can be viewed for 1LKY's classification [ETV6_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ETV6_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1LKY
  • Community annotation for 1LKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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