1JID Signaling Protein Rna date Jul 02, 2001
title Human Srp19 In Complex With Helix 6 Of Human Srp Rna
authors K.Wild, I.Sinning, S.Cusack
compound source
Molecule: Helix 6 Of Human Srp Rna
Chain: B
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans. The Rna Has Been In Vitro Transcribed Using T7 Rna Polymerase.;

Molecule: Signal Recognition Particle 19 Kda Protein
Chain: A
Fragment: 24 C-Terminal Residues Truncated
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
symmetry Space Group: C 2 2 21
R_factor 0.186 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.813 109.782 89.461 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 5BU, A23, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of an early protein-RNA assembly complex of the signal recognition particle., Wild K, Sinning I, Cusack S, Science 2001 Oct 19;294(5542):598-601. PMID:11641499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1jid.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1JID
  • CSU: Contacts of Structural Units for 1JID
  • Likely Quarternary Molecular Structure file(s) for 1JID
  • Structure Factors (271 Kb)
  • Retrieve 1JID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JID from S2C, [Save to disk]
  • Re-refined 1jid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JID
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JID, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jida_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jid from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jid] [1jid_A] [1jid_B]
  • SWISS-PROT database: [P09132]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [SRP19_HUMAN] by SWISSPFAM
  • Other resources with information on 1JID
  • Community annotation for 1JID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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