1JM6	Transferase	date	Jul 17, 2001
title	Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
authors	C.N.Steussy, K.M.Popov, M.M.Bowker-Kinley, R.B.Sloan, R.A.Harris J.A.Hamilton
compound		source
Molecule: Pyruvate Dehydrogenase Kinase, Isozyme 2 Chain: A, B Synonym: [Pyruvate Dehydrogenase [Lipoamide]] Kinase Isozym Mitochondrial, Pdk P45; Ec: 2.7.1.99 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21[De3] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a (Novagen)
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.421 109.874 71.414 90.00 104.52 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ADP, MG	enzyme	Transferase E.C.2.7.1.99 BRENDA
related structures	by homologous chain: 1Y8N, 1Y8O
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of pyruvate dehydrogenase kinase. Novel folding pattern for a serine protein kinase., Steussy CN, Popov KM, Bowker-Kinley MM, Sloan RB Jr, Harris RA, Hamilton JA, J Biol Chem 2001 Oct 5;276(40):37443-50. PMID:11483605

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (1jm6.pdb1.gz) 113 Kb LPC: Ligand-Protein Contacts for 1JM6 CSU: Contacts of Structural Units for 1JM6 Likely Quarternary Molecular Structure file(s) for 1JM6 Structure Factors (254 Kb) Retrieve 1JM6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JM6 from S2C, [Save to disk] Re-refined 1jm6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JM6 in 3D

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Visual 3D analysis of 1JM6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JM6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jm6a1, region A:1003-1169 [Jmol] [rasmolscript] [script source]     - Domain d1jm6a2, region A:1177-1366 [Jmol] [rasmolscript] [script source]     - Domain d1jm6b1, region B:1002-1169 [Jmol] [rasmolscript] [script source]     - Domain d1jm6b2, region B:1177-1365 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jm6_A] [1jm6_B] [1jm6] SWISS-PROT database: [Q64536] Domain organization of [PDK2_RAT] by SWISSPFAM Domain found in 1JM6: [HATPase_c ] by SMART

Other resources with information on 1JM6

Community annotation for 1JM6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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