1JMC Replication Dna date Nov 11, 1996
title Single Stranded Dna-Binding Domain Of Human Replication Protein A Bound To Single Stranded Dna, Rpa70 Subunit, Residues 183-420
authors A.Bochkarev, R.Pfuetzner, A.Edwards, L.Frappier
compound source
Molecule: Dna (5'-D(Cpcpcpcpcpcpcpc)-3')
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Replication Protein A (Rpa))
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.100 R_Free 0.330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.250 77.990 95.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1FGU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the single-stranded-DNA-binding domain of replication protein A bound to DNA., Bochkarev A, Pfuetzner RA, Edwards AM, Frappier L, Nature 1997 Jan 9;385(6612):176-81. PMID:8990123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1jmc.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1JMC
  • Likely Quarternary Molecular Structure file(s) for 1JMC
  • Structure Factors (88 Kb)
  • Retrieve 1JMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JMC from S2C, [Save to disk]
  • Re-refined 1jmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JMC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JMC, from MSDmotif at EBI
  • Genome occurence of 1JMC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jmca1, region A:183-298 [Jmol] [rasmolscript] [script source]
        - Domain d1jmca2, region A:299-420 [Jmol] [rasmolscript] [script source]
  • Fold representative 1jmc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jmc_B] [1jmc] [1jmc_A]
  • SWISS-PROT database: [P27694]
  • Domain organization of [RFA1_HUMAN] by SWISSPFAM
  • Other resources with information on 1JMC
  • Community annotation for 1JMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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