1JOW	Cell Cycle Transferase	date	Jul 31, 2001
title	Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyc
authors	U.Schulze-Gahmen, S.H.Kim
compound		source
Molecule: Cyclin Homolog Chain: A Synonym: V-Cyclin Engineered: Yes		Organism_scientific: Saimiriine Herpesvirus 2 Organism_common: Herpesvirus Saimiri Organism_taxid: 10381 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac Hta Donor Plasmid
Molecule: Cell Division Protein Kinase 6 Chain: B Fragment: Residues 1-308 Synonym: Cdk6, Serinethreonine-Protein Kinase Plstire Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk6 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1 Donor Plasmid
symmetry	Space Group: P 65 2 2	R_factor 0.266 R_Free 0.323
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.140 70.140 448.770 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand		enzyme	Transferase E.C.2.7.1 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for CDK6 activation by a virus-encoded cyclin., Schulze-Gahmen U, Kim SH, Nat Struct Biol 2002 Mar;9(3):177-81. PMID:11828325

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1jow.pdb1.gz) 73 Kb CSU: Contacts of Structural Units for 1JOW Likely Quarternary Molecular Structure file(s) for 1JOW Structure Factors (104 Kb) Retrieve 1JOW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JOW from S2C, [Save to disk] Re-refined 1jow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JOW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JOW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JOW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jowa2, region A:149-254 [Jmol] [rasmolscript] [script source]     - Domain d1jowa1, region A:9-148 [Jmol] [rasmolscript] [script source]     - Domain d1jowb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jow_B] [1jow] [1jow_A] SWISS-PROT database: [Q00534] [Q01043] Domain organization of [CDK6_HUMAN] [CGH2_SHV21] by SWISSPFAM Domains found in 1JOW: [CYCLIN] [S_TKc ] by SMART

Other resources with information on 1JOW

Community annotation for 1JOW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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