1JPP Cell Adhesion date Aug 02, 2001
title The Structure Of A Beta-Catenin Binding Repeat From Adenomat Polyposis Coli (Apc) In Complex With Beta-Catenin
authors K.E.Spink, S.G.Fridman, W.I.Weis
compound source
Molecule: Beta-Catenin
Chain: A, B
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t

Molecule: Adenomatous Polyposis Coli Protein
Chain: C, D
Synonym: Apc Protein
Engineered: Yes

Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry Space Group: P 1
R_factor 0.234 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.090 69.255 95.099 68.70 87.04 85.32
method X-Ray Diffractionresolution 3.10 Å
ligand GOL enzyme
Primary referenceMolecular mechanisms of beta-catenin recognition by adenomatous polyposis coli revealed by the structure of an APC-beta-catenin complex., Eklof Spink K, Fridman SG, Weis WI, EMBO J 2001 Nov 15;20(22):6203-12. PMID:11707392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1jpp.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (1jpp.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1JPP
  • CSU: Contacts of Structural Units for 1JPP
  • Likely Quarternary Molecular Structure file(s) for 1JPP
  • Structure Factors (144 Kb)
  • Retrieve 1JPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JPP from S2C, [Save to disk]
  • Re-refined 1jpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JPP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jppa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jppb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jpp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jpp_C] [1jpp_A] [1jpp] [1jpp_B] [1jpp_D]
  • SWISS-PROT database: [P25054] [Q02248]
  • Domain organization of [APC_HUMAN] [CTNB1_MOUSE] by SWISSPFAM
  • Domain found in 1JPP: [ARM ] by SMART
  • Alignments of the sequence of 1JPP with the sequences similar proteins can be viewed for 1JPP's classification [APC_HUMAN] [CTNB1_MOUSE] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [APC_HUMAN] [CTNB1_MOUSE] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1JPP
  • Community annotation for 1JPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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