1JPS Immune System date Aug 03, 2001
title Crystal Structure Of Tissue Factor In Complex With Humanized
authors K.Faelber, D.Kirchhofer, L.Presta, R.F.Kelley, Y.A.Muller
compound source
Molecule: Immunoglobulin Fab D3h44, Light Chain
Chain: L
Fragment: Fab Fragment
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pemx1

Molecule: Immunoglobulin Fab D3h44, Heavy Chain
Chain: H
Fragment: Fab Fragment
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pemx1

Molecule: Tissue Factor
Chain: T
Fragment: Extracellular Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pemx1
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.250 93.280 110.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
related structures by homologous chain: 1DAN, 1G7H, 1JPT, 2HFT
Gene
Ontology
ChainFunctionProcessComponent
T


Primary referenceThe 1.85 A resolution crystal structures of tissue factor in complex with humanized Fab D3h44 and of free humanized Fab D3h44: revisiting the solvation of antigen combining sites., Faelber K, Kirchhofer D, Presta L, Kelley RF, Muller YA, J Mol Biol 2001 Oct 12;313(1):83-97. PMID:11601848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1jps.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 1JPS
  • Likely Quarternary Molecular Structure file(s) for 1JPS
  • Structure Factors (582 Kb)
  • Retrieve 1JPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JPS from S2C, [Save to disk]
  • Re-refined 1jps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JPS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JPS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jpsh1, region H:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1jpsh2, region H:118-217 [Jmol] [rasmolscript] [script source]
        - Domain d1jpsl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1jpsl2, region L:108-213 [Jmol] [rasmolscript] [script source]
        - Domain d1jpst2, region T:107-211 [Jmol] [rasmolscript] [script source]
        - Domain d1jpst1, region T:5-106 [Jmol] [rasmolscript] [script source]
  • Fold representative 1jps from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jps_L] [1jps_H] [1jps] [1jps_T]
  • SWISS-PROT database: [P13726]
  • Domain organization of [TF_HUMAN] by SWISSPFAM
  • Domains found in 1JPS: [IG_like] [IGv ] by SMART
  • Other resources with information on 1JPS
  • Community annotation for 1JPS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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