1JPT	Immune System	date	Aug 03, 2001
title	Crystal Structure Of Fab D3h44
authors	K.Faelber, D.Kirchhofer, L.Presta, R.F.Kelley, Y.A.Muller
compound		source
Molecule: Immunoglobulin Fab D3h44, Light Chain Chain: L Fragment: Fab Fragment Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pemx1
Molecule: Immunoglobulin Fab D3h44, Heavy Chain Chain: H Fragment: Fab Fragment Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pemx1
symmetry	Space Group: P 1 21 1	R_factor 0.182 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.120 78.200 58.920 90.00 107.61 90.00
method	X-Ray Diffraction	resolution	1.85 Å
related structures	by homologous chain: 1AQK, 1JPS, 1KIQ
Primary reference	The 1.85 A resolution crystal structures of tissue factor in complex with humanized Fab D3h44 and of free humanized Fab D3h44: revisiting the solvation of antigen combining sites., Faelber K, Kirchhofer D, Presta L, Kelley RF, Muller YA, J Mol Biol 2001 Oct 12;313(1):83-97. PMID:11601848

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (1jpt.pdb1.gz) 72 Kb CSU: Contacts of Structural Units for 1JPT Likely Quarternary Molecular Structure file(s) for 1JPT Structure Factors (291 Kb) Retrieve 1JPT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JPT from S2C, [Save to disk] Re-refined 1jpt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JPT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JPT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JPT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jpth1, region H:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1jpth2, region H:118-217 [Jmol] [rasmolscript] [script source]     - Domain d1jptl1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1jptl2, region L:108-213 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jpt] [1jpt_L] [1jpt_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1JPT: [IG_like] [IGv ] by SMART

Other resources with information on 1JPT

Community annotation for 1JPT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---