1JS6 Lyase date Aug 16, 2001
title Crystal Structure Of Dopa Decarboxylase
authors P.Burkhard, P.Dominici, C.Borri-Voltattorni, J.N.Jansonius, V.N.Malashkevich
compound source
Molecule: Dopa Decarboxylase
Chain: A, B
Synonym: Aromatic-L-Amino-Acid Decarboxylase; Ddc
Ec: 4.1.1.28
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Kidney
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkkddc(Delta)4
symmetry Space Group: P 62
R_factor 0.206 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.860 152.860 86.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand PLP enzyme Lyase E.C.4.1.1.28 BRENDA
related structures by homologous chain: 1JS3
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into Parkinson's disease treatment from drug-inhibited DOPA decarboxylase., Burkhard P, Dominici P, Borri-Voltattorni C, Jansonius JN, Malashkevich VN, Nat Struct Biol 2001 Nov;8(11):963-7. PMID:11685243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (1js6.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 1JS6
  • CSU: Contacts of Structural Units for 1JS6
  • Likely Quarternary Molecular Structure file(s) for 1JS6
  • Structure Factors (251 Kb)
  • Retrieve 1JS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JS6 from S2C, [Save to disk]
  • Re-refined 1js6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JS6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JS6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1js6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1js6b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1js6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1js6_A] [1js6_B] [1js6]
  • SWISS-PROT database: [P80041]
  • Domain organization of [DDC_PIG] by SWISSPFAM
  • Other resources with information on 1JS6
  • Community annotation for 1JS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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