1K5X STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 15A CRYO-EM MAP. THIS FILE 1K5X CONTAINS THE 40S RIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE MRNA CODON. THE FILE 1K5Y CONTAINS THE 60S RIBOSOMAL SUBUNIT. date 2001-10-12
authors Spahn, C.M.T, Beckmann, R, Eswar, N, Penczek, P, Sali, A, Blobel, G, Frank, J
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions., Spahn CM, Beckmann R, Eswar N, Penczek PA, Sali A, Blobel G, Frank J, Cell 2001 Nov 2;107(3):373-86. PMID:11701127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1K5X
  • SEQRES to COORDINATES correlation for 1K5X from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K5X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • SWISS-PROT database: [P26781] [P05756] [P06367] [Q01855] [P40213] [P35271] [P38701] [P0C0W1] [P32827] [P41058] [P25443] [P05750] [P26783] [O13516] [P32905]
  • Domain organization of [RS11_YEAST] [RS13_YEAST] [RS14A_YEAST] [RS15_YEAST] [RS16_YEAST] [RS18_YEAST] [RS20_YEAST] [RS22A_YEAST] [RS23_YEAST] [RS29B_YEAST] [RS2_YEAST] [RS3_YEAST] [RS5_YEAST] [RS9A_YEAST] [RSSA1_YEAST] by SWISSPFAM
    • Other resources with information on 1K5X
  • Community annotation for 1K5X at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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