1K5Y STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 15A CRYO-EM MAP. THIS FILE 1K5Y CONTAINS THE 60S RIBOSOMAL SUBUNIT. THE FILE 1K5X CONTAINS THE 40S RIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE MRNA CODON. date 2001-10-12
authors Spahn, C.M.T, Beckmann, R, Eswar, N, Penczek, P, Sali, A, Blobel, G, Frank, J
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions., Spahn CM, Beckmann R, Eswar N, Penczek PA, Sali A, Blobel G, Frank J, Cell 2001 Nov 2;107(3):373-86. PMID:11701127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1K5Y
  • SEQRES to COORDINATES correlation for 1K5Y from S2C, [Save to disk]
    • View 1K5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K5Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • SWISS-PROT database: [P41805] [P0C0W9] [P17079] [P05748] [P26784] [P05740] [P07279] [P05735] [P53030] [Q02753] [P04451] [P04449] [P04456] [P05743] [P02406] [P05736] [P0C2H8] [P38061] [P39741] [P49166] [P14126] [P49631] [P02405] [P10664] [P26321] [P05737] [P17076] [P05738]
  • Domain organization of [RL10_YEAST] [RL11A_YEAST] [RL12_YEAST] [RL15A_YEAST] [RL16A_YEAST] [RL17A_YEAST] [RL18_YEAST] [RL19_YEAST] [RL1_YEAST] [RL21A_YEAST] [RL23_YEAST] [RL24A_YEAST] [RL25_YEAST] [RL26A_YEAST] [RL28_YEAST] [RL2_YEAST] [RL31A_YEAST] [RL32_YEAST] [RL35_YEAST] [RL37A_YEAST] [RL3_YEAST] [RL43_YEAST] [RL44_YEAST] [RL4A_YEAST] [RL5_YEAST] [RL7A_YEAST] [RL8A_YEAST] [RL9A_YEAST] by SWISSPFAM
    • Other resources with information on 1K5Y
  • Community annotation for 1K5Y at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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