1KAG Transferase date Nov 01, 2001
title Crystal Structure Of The Escherichia Coli Shikimate Kinase I
authors M.J.Romanowski, S.K.Burley, New York Sgx Research Center For S Genomics (Nysgxrc)
compound source
Molecule: Shikimate Kinase I
Chain: A, B
Synonym: Ski
Ec: 2.7.1.71
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Arok
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.726 63.417 67.941 90.00 91.27 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Transferase E.C.2.7.1.71 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam., Romanowski MJ, Burley SK, Proteins 2002 Jun 1;47(4):558-62. PMID:12001235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1kag.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1kag.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1KAG
  • Likely Quarternary Molecular Structure file(s) for 1KAG
  • Structure Factors (266 Kb)
  • Retrieve 1KAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KAG from S2C, [Save to disk]
  • Re-refined 1kag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KAG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KAG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kaga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kagb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kag] [1kag_B] [1kag_A]
  • SWISS-PROT database: [P0A6D7]
  • Domain organization of [AROK_ECOLI] by SWISSPFAM
  • Other resources with information on 1KAG
  • Community annotation for 1KAG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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