1KLV Protein Binding date Dec 13, 2001
title Solution Structure And Backbone Dynamics Of Gabarap, Gabaa R Associated Protein
authors T.Kouno, K.Miura, M.Tada, T.Kanematsu, S.Tate, M.Shirakawa, M.Hira K.Kawano
compound source
Molecule: Gaba(A) Receptor Associated Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
related structures by homologous chain: 1KJT, 1KM7
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary reference1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein., Kouno T, Miura K, Kanematsu T, Shirakawa M, Hirata M, Kawano K, J Biomol NMR. 2002 Jan;22(1):97-8. PMID:11885988
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (553 Kb) [Save to disk]
  • Biological Unit Coordinates (1klv.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1KLV
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLV from S2C, [Save to disk]
  • View 1KLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KLV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KLV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1klva_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1klv_A] [1klv]
  • SWISS-PROT database: [O95166]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GBRAP_HUMAN] by SWISSPFAM
  • Other resources with information on 1KLV
  • Community annotation for 1KLV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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