1KLV Protein Binding date Dec 13, 2001
title Solution Structure And Backbone Dynamics Of Gabarap, Gabaa Receptor Associated Protein
authors T.Kouno, K.Miura, M.Tada, T.Kanematsu, S.Tate, M.Shirakawa, M.Hirata, K.Kawano
compound source
Molecule: Gaba(A) Receptor Associated Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
related structures by homologous chain: 1KJT, 1KM7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein., Kouno T, Miura K, Kanematsu T, Shirakawa M, Hirata M, Kawano K, J Biomol NMR. 2002 Jan;22(1):97-8. PMID:11885988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1KLV
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLV from S2C, [Save to disk]
  • View 1KLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KLV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KLV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1klva_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1klv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1klv_A] [1klv]
  • SWISS-PROT database: [O95166]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GBRAP_HUMAN] by SWISSPFAM
  • Other resources with information on 1KLV
  • Community annotation for 1KLV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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