1L3X Protein Binding date Mar 01, 2002
title Solution Structure Of Novel Disintegrin Salmosin
authors J.Shin, W.Lee
compound source
Molecule: Platelet Aggregation Inhibitor Disintegrin
Chain: A
Fragment: Residues 1-73
Synonym: Salmosin
 Organism_scientific: Gloydius Blomhoffi Brevicaudus
Organism_taxid: 259325
Strain: Brevicaudus
methodSolution NMR
note 1L3X supersedes 1IQ2
related structures by homologous chain: 2ECH
Primary referenceSolution structure of a novel disintegrin, salmosin, from Agkistrondon halys venom., Shin J, Hong SY, Chung K, Kang I, Jang Y, Kim DS, Lee W, Biochemistry. 2003 Dec 16;42(49):14408-15. PMID:14661951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (1l3x.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1L3X
  • Original NMR restraints for 1L3X from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1L3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L3X from S2C, [Save to disk]
    • View 1L3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L3X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L3X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l3xa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l3x_A] [1l3x]
  • SWISS-PROT database: [Q90WC0]
  • Domain organization of [VMSA1_AGKHB] by SWISSPFAM
  • Domain found in 1L3X: [DISIN ] by SMART
    • Other resources with information on 1L3X
  • Community annotation for 1L3X at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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