1L6O	Gene Regulation	date	Mar 11, 2002
title	Xenopus Dishevelled Pdz Domain
authors	B.N.R.Cheyette, J.S.Waxman, J.R.Miller, K.I.Takemaru, L.C.Sheldahl, N.Khlebtsova, E.P.Fox, T.Earnest, R.T.Moon
compound		source
Molecule: Segment Polarity Protein Dishevelled Homolog Dvl- 2; Chain: A, B, C Synonym: Dishevelled-2, Dsh Homolog 2, Xdsh Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dapper 1 Chain: D, E, F Synonym: Dishevelled Interacting Antagonist, Dpr1 Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Sequence Is Naturally Found In Xenopus Laevis (African Clawed Frog).
symmetry	Space Group: P 41 21 2	R_factor 0.277 R_Free 0.323
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.733 84.734 123.154 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Dapper, a Dishevelled-associated antagonist of beta-catenin and JNK signaling, is required for notochord formation., Cheyette BN, Waxman JS, Miller JR, Takemaru K, Sheldahl LC, Khlebtsova N, Fox EP, Earnest T, Moon RT, Dev Cell 2002 Apr;2(4):449-61. PMID:11970895

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1l6o.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1L6O CSU: Contacts of Structural Units for 1L6O Likely Quarternary Molecular Structure file(s) for 1L6O Retrieve 1L6O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1L6O from S2C, [Save to disk]

View 1L6O in 3D

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Visual 3D analysis of 1L6O

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1L6O, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l6oa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1l6ob_, region B [Jmol] [rasmolscript] [script source]     - Domain d1l6oc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1l6o_F] [1l6o_D] [1l6o_B] [1l6o_E] [1l6o_C] [1l6o] [1l6o_A] SWISS-PROT database: [P51142] Domain organization of [DVL2_XENLA] by SWISSPFAM Domain found in 1L6O: [PDZ ] by SMART

Other resources with information on 1L6O

Community annotation for 1L6O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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