1LFM Electron Transport date Apr 11, 2002
title Crystal Structure Of Cobalt(III)-Substituted Cytochrome C (T
authors F.A.Tezcan, W.M.Findley, B.R.Crane, S.A.Ross, J.G.Lyubovitsky, H. J.R.Winkler
compound source
Molecule: Cytochrome C
Chain: A, B
Organism_scientific: Thunnus Thynnus
Organism_common: Bluefin Tuna
Organism_taxid: 8237
Organelle: Mitochondria
symmetry Space Group: P 43
R_factor 0.183 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.175 74.175 35.561 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand COH enzyme
related structures by homologous chain: 1CCR, 5CYT
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceUsing deeply trapped intermediates to map the cytochrome c folding landscape., Tezcan FA, Findley WM, Crane BR, Ross SA, Lyubovitsky JG, Gray HB, Winkler JR, Proc Natl Acad Sci U S A 2002 Jun 25;99(13):8626-30. PMID:12084923
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1lfm.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (1lfm.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1LFM
  • CSU: Contacts of Structural Units for 1LFM
  • Likely Quarternary Molecular Structure file(s) for 1LFM
  • Retrieve 1LFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LFM from S2C, [Save to disk]
  • View 1LFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1LFM 1LFMA 1LFMB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LFM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lfma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lfmb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lfm_A] [1lfm] [1lfm_B]
  • SWISS-PROT database: [P81459]
  • Domain organization of [CYC_THUAA] by SWISSPFAM
  • Other resources with information on 1LFM
  • Community annotation for 1LFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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