5CYT Electron Transport (Heme Protein) date Jan 14, 1988
title Refinement Of Myoglobin And Cytochrome C
authors T.Takano
compound source
Molecule: Cytochrome C
Chain: R
Engineered: Yes
Organism_scientific: Thunnus Alalunga
Organism_common: Albacore
Organism_taxid: 8235
symmetry Space Group: P 21 21 2
R_factor 0.159 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.330 87.100 34.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACE, HEM enzyme
note 5CYT supersedes 4CYT, 2CYT
related structures by homologous chain: 1LFM, 1YCC
Gene
Ontology
ChainFunctionProcessComponent
R
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (5cyt.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 5CYT
  • CSU: Contacts of Structural Units for 5CYT
  • Likely Quarternary Molecular Structure file(s) for 5CYT
  • Structure Factors (343 Kb)
  • Retrieve 5CYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CYT from S2C, [Save to disk]
  • Re-refined 5cyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 5CYT from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 5CYT, from MSDmotif at EBI
  • Genome occurence of 5CYT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5cytr_, region R [Jmol] [rasmolscript] [script source]
  • Fold representative 5cyt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cyt] [5cyt_R]
  • SWISS-PROT database: [P81459]
  • Domain organization of [CYC_THUAA] by SWISSPFAM
  • Other resources with information on 5CYT
  • Community annotation for 5CYT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 5CYT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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