1LME	Hydrolase	date	May 01, 2002
title	Crystal Structure Of Peptide Deformylase From Thermotoga Mar
authors	A.Kreusch, G.Spraggon, C.C.Lee, H.Klock, D.Mcmullan, K.Ng, T.Shin, J.Vincent, I.Warner, C.Ericson, S.A.Lesley, Joint Center For St Genomics (Jcsg)
compound		source
Molecule: Peptide Deformylase Chain: A, B Synonym: Pdf Ec: 3.5.1.88 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmh1
symmetry	Space Group: P 32 2 1	R_factor 0.198 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.048 65.048 151.371 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	OCS	enzyme	Hydrolase E.C.3.5.1.88 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure analysis of peptide deformylases from Streptococcus pneumoniae, Staphylococcus aureus, Thermotoga maritima and Pseudomonas aeruginosa: snapshots of the oxygen sensitivity of peptide deformylase., Kreusch A, Spraggon G, Lee CC, Klock H, McMullan D, Ng K, Shin T, Vincent J, Warner I, Ericson C, Lesley SA, J Mol Biol 2003 Jul 4;330(2):309-21. PMID:12823970

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1lme.pdb1.gz) 27 Kb Biological Unit Coordinates (1lme.pdb2.gz) 26 Kb LPC: Ligand-Protein Contacts for 1LME CSU: Contacts of Structural Units for 1LME Likely Quarternary Molecular Structure file(s) for 1LME Retrieve 1LME in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LME from S2C, [Save to disk]

View 1LME in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LME

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LME, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lmea_, region A [Jmol] [rasmolscript] [script source]     - Domain d1lmeb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lme] [1lme_A] [1lme_B] SWISS-PROT database: [P96113] Domain organization of [DEF_THEMA] by SWISSPFAM

Other resources with information on 1LME

Community annotation for 1LME at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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