1LOT Transport Protein, Structural Protein date May 07, 2002
title Crystal Structure Of The Complex Of Actin With Vitamin D-Bin Protein
authors J.F.Head, N.Swamy, R.Ray
compound source
Molecule: Vitamin D-Binding Protein
Chain: A
Synonym: Dbp, Group-Specific Component, Gc-Globulin, Vdb
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Actin, Alpha Skeletal Muscle
Chain: B
Synonym: Alpha-Actin 1

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.171 87.341 159.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ATP, CA, GOL, HIC enzyme
related structures by homologous chain: 1J7E, 1MA9, 1SQK, 2BTF
Gene
Ontology
ChainFunctionProcessComponent
A
  • vitamin transmembrane transp...


  • B


    Primary referenceCrystal structure of the complex between actin and human vitamin D-binding protein at 2.5 A resolution., Head JF, Swamy N, Ray R, Biochemistry 2002 Jul 23;41(29):9015-20. PMID:12119014
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (1lot.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 1LOT
  • CSU: Contacts of Structural Units for 1LOT
  • Likely Quarternary Molecular Structure file(s) for 1LOT
  • Retrieve 1LOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LOT from S2C, [Save to disk]
  • View 1LOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LOT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LOT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lota1, region A:1-198 [Jmol] [rasmolscript] [script source]
        - Domain d1lota2, region A:199-386 [Jmol] [rasmolscript] [script source]
        - Domain d1lota3, region A:387-457 [Jmol] [rasmolscript] [script source]
        - Domain d1lotb2, region B:147-373 [Jmol] [rasmolscript] [script source]
        - Domain d1lotb1, region B:3-146 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lot_A] [1lot] [1lot_B]
  • SWISS-PROT database: [P68135] [P02774]
  • Domain organization of [ACTS_RABIT] [VTDB_HUMAN] by SWISSPFAM
  • Domains found in 1LOT: [ACTIN] [ALBUMIN ] by SMART
  • Other resources with information on 1LOT
  • Community annotation for 1LOT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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