1MA9 Crystal structure of the complex of human vitamin D binding protein and rabbit muscle actin date
authors Verboven, C., Bogaerts, I., Waelkens, E., Rabijns, A., Baelen, H.Van., Bouillon, R., Ranter, C.De.
compound source
symmetry
R_factor
R_Free 0.25
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ATP, HIC, MG enzyme
related structures by homologous chain: 1C0F, 1J78, 1LOT, 1SQK
Gene
Ontology
ChainFunctionProcessComponent
A
  • vitamin transmembrane transp...


  • B


    Primary referenceActin-DBP: the perfect structural fit?, Verboven C, Bogaerts I, Waelkens E, Rabijns A, Van Baelen H, Bouillon R, De Ranter C, Acta Crystallogr D Biol Crystallogr 2003 Feb;59(Pt 2):263-73. PMID:12554937
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1ma9.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 1MA9
  • CSU: Contacts of Structural Units for 1MA9
  • Likely Quarternary Molecular Structure file(s) for 1MA9
  • Structure Factors (411 Kb)
  • Retrieve 1MA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MA9 from S2C, [Save to disk]
  • Re-refined 1ma9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MA9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MA9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ma9a1, region A:1-198 [Jmol] [rasmolscript] [script source]
        - Domain d1ma9a2, region A:199-386 [Jmol] [rasmolscript] [script source]
        - Domain d1ma9a3, region A:387-458 [Jmol] [rasmolscript] [script source]
        - Domain d1ma9b2, region B:147-371 [Jmol] [rasmolscript] [script source]
        - Domain d1ma9b1, region B:5-146 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ma9] [1ma9_B] [1ma9_A]
  • SWISS-PROT database: [P68135] [P02774]
  • Domain organization of [ACTS_RABIT] [VTDB_HUMAN] by SWISSPFAM
  • Domains found in 1MA9: [ACTIN] [ALBUMIN ] by SMART
  • Other resources with information on 1MA9
  • Community annotation for 1MA9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science