OCA Atlas for 1LVB

1LVB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, MSE

enzyme

note

1LVB is a representative structure

related structures

by homologous chain: 1LVM, 1Q31

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Structural basis for the substrate specificity of tobacco etch virus protease., Phan J, Zdanov A, Evdokimov AG, Tropea JE, Peters HK 3rd, Kapust RB, Li M, Wlodawer A, Waugh DS, J Biol Chem 2002 Dec 27;277(52):50564-72. Epub 2002 Oct 10. PMID:12377789

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]

Biological Unit Coordinates (1lvb.pdb1.gz) 39 Kb

Biological Unit Coordinates (1lvb.pdb2.gz) 39 Kb

Biological Unit Coordinates (1lvb.pdb3.gz) 297 Kb

Biological Unit Coordinates (1lvb.pdb4.gz) 149 Kb

Biological Unit Coordinates (1lvb.pdb5.gz) 76 Kb

LPC: Ligand-Protein Contacts for 1LVB

CSU: Contacts of Structural Units for 1LVB

Likely Quarternary Molecular Structure file(s) for 1LVB

Structure Factors (727 Kb)

Retrieve 1LVB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1LVB from S2C, [Save to disk]

Re-refined 1lvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LVB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lvb] [1lvb_A] [1lvb_B] [1lvb_C] [1lvb_D]

SWISS-PROT database: [P04517]

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