1LWW Hydrolase Dna date Jun 03, 2002
title Borohydride-Trapped Hogg1 Intermediate Structure Co- Crystallized With 8-Bromoguanine
authors J.C.Fromme, S.D.Bruner, W.Yang, M.Karplus, G.L.Verdine
compound source
Molecule: 5'- D(Gpgptpapgpapcpcptpgpgpapcpgpc)-3';
Chain: D
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Gpcpgptpcpcpap(Ped) Pgptpcptpapcpc)-3';
Chain: E
Engineered: Yes

Synthetic: Yes

Molecule: 8-Oxoguanine Dna Glycosylase
Chain: A
Fragment: Core Fragment (Residues 12 To 327)
Ec: 3.2.2.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ogg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.236 R_Free 0.257
length a length b length c angle alpha angle beta angle gamma
92.174 92.174 211.887 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand BRG, CA, PED enzyme Hydrolase E.C.3.2.2 BRENDA
related structures by homologous chain: 1EBM, 1KO9

Primary referenceProduct-assisted catalysis in base-excision DNA repair., Fromme JC, Bruner SD, Yang W, Karplus M, Verdine GL, Nat Struct Biol 2003 Mar;10(3):204-11. PMID:12592398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1lww.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1LWW
  • CSU: Contacts of Structural Units for 1LWW
  • Likely Quarternary Molecular Structure file(s) for 1LWW
  • Structure Factors (351 Kb)
  • Retrieve 1LWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LWW from S2C, [Save to disk]
  • Re-refined 1lww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LWW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LWW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lwwa1, region A:136-325 [Jmol] [rasmolscript] [script source]
        - Domain d1lwwa2, region A:9-135 [Jmol] [rasmolscript] [script source]
  • Fold representative 1lww from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lww_A] [1lww_D] [1lww] [1lww_E]
  • SWISS-PROT database: [O15527]
  • Domain organization of [OGG1_HUMAN] by SWISSPFAM
  • Domain found in 1LWW: [ENDO3c ] by SMART
  • Other resources with information on 1LWW
  • Community annotation for 1LWW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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