1M1D TETRAHYMENA GCN5 WITH BOUND BISUBSTRATE ANALOG INHIBITOR date
authors Poux, A.N., Cebrat, M., Kim, C.M., Cole, P.A., Marmorstein, R.
compound source
symmetry
R_factor
R_Free 0.2650000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand LYX enzyme
related structures by homologous chain: 1QSN, 1QSR
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructure of the GCN5 histone acetyltransferase bound to a bisubstrate inhibitor., Poux AN, Cebrat M, Kim CM, Cole PA, Marmorstein R, Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14065-70. PMID:12391296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1m1d.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1m1d.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1M1D
  • CSU: Contacts of Structural Units for 1M1D
  • Likely Quarternary Molecular Structure file(s) for 1M1D
  • Retrieve 1M1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M1D from S2C, [Save to disk]
  • View 1M1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M1D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M1D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m1da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m1dc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m1d_D] [1m1d_C] [1m1d_B] [1m1d] [1m1d_A]
  • SWISS-PROT database: [P61830] [Q27198]
  • Domain organization of [H3_YEAST] [Q27198_TETTH] by SWISSPFAM
  • Other resources with information on 1M1D
  • Community annotation for 1M1D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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