1M2Z Crystal structure of a dimer complex of the human glucocorticoid receptor ligand-binding domain bound to dexamethasone and a TIF2 coactivator motif date
authors Bledsoe, R.B., Montana, V.G., Stanley, T.B., Delves, C.J., Apolito, C.J., Mckee, D.D., Consler, T.G., Parks, D.J., Stewart, E.L., Willson, T.M., Lambert, M.H., Moore, J.T., Pearce, K.H., Xu, H.E.
compound source
symmetry
R_factor
R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand BOG, DEX BindingDB enzyme
related structures by homologous chain: 1KNU
Primary referenceCrystal structure of the glucocorticoid receptor ligand binding domain reveals a novel mode of receptor dimerization and coactivator recognition., Bledsoe RK, Montana VG, Stanley TB, Delves CJ, Apolito CJ, McKee DD, Consler TG, Parks DJ, Stewart EL, Willson TM, Lambert MH, Moore JT, Pearce KH, Xu HE, Cell 2002 Jul 12;110(1):93-105. PMID:12151000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1m2z.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 1M2Z
  • CSU: Contacts of Structural Units for 1M2Z
  • Likely Quarternary Molecular Structure file(s) for 1M2Z
  • Structure Factors (252 Kb)
  • Retrieve 1M2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M2Z from S2C, [Save to disk]
  • Re-refined 1m2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M2Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M2Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2za_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m2zd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m2z_E] [1m2z] [1m2z_D] [1m2z_B] [1m2z_A]
  • SWISS-PROT database: [P04150] [Q15596]
  • Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 1M2Z: [HOLI ] by SMART
    • Other resources with information on 1M2Z
  • Community annotation for 1M2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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