1M2Z Hormone Hormone Activator date Jun 26, 2002
title Crystal Structure Of A Dimer Complex Of The Human Glucocorti Receptor Ligand-Binding Domain Bound To Dexamethasone And A Coactivator Motif
authors R.B.Bledsoe, V.G.Montana, T.B.Stanley, C.J.Delves, C.J.Apolito, D T.G.Consler, D.J.Parks, E.L.Stewart, T.M.Willson, M.H.Lambert, J K.H.Pearce, H.E.Xu
compound source
Molecule: Glucocorticoid Receptor
Chain: A, D
Fragment: Ligand Binding Domain, Residues 521-777
Synonym: Gr
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Pet System
Expression_system_plasmid: Pet24

Molecule: Nuclear Receptor Coactivator 2
Chain: B, E
Fragment: Tif2 Coactivator Motif, Residues 734-754
Synonym: Transcriptional Intermediary Factor 2, Tif2
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry Space Group: P 61
R_factor 0.237 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.843 125.843 85.976 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand BOG, DEX BindingDB enzyme
related structures by homologous chain: 1KNU
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceCrystal structure of the glucocorticoid receptor ligand binding domain reveals a novel mode of receptor dimerization and coactivator recognition., Bledsoe RK, Montana VG, Stanley TB, Delves CJ, Apolito CJ, McKee DD, Consler TG, Parks DJ, Stewart EL, Willson TM, Lambert MH, Moore JT, Pearce KH, Xu HE, Cell 2002 Jul 12;110(1):93-105. PMID:12151000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1m2z.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 1M2Z
  • CSU: Contacts of Structural Units for 1M2Z
  • Likely Quarternary Molecular Structure file(s) for 1M2Z
  • Structure Factors (252 Kb)
  • Retrieve 1M2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M2Z from S2C, [Save to disk]
  • Re-refined 1m2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M2Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M2Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2za_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m2zd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1m2z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m2z_E] [1m2z] [1m2z_D] [1m2z_B] [1m2z_A]
  • SWISS-PROT database: [P04150] [Q15596]
  • Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 1M2Z: [HOLI ] by SMART
  • Other resources with information on 1M2Z
  • Community annotation for 1M2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science