1KNU LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA IN COMPLEX WITH A SYNTHETIC AGONIST date
authors Svensson, L.A., Mortensen, S.B., Fleckner, J., Woeldike, H.F.
compound source
symmetry
R_factor
R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand YPA BindingDB enzyme
related structures by homologous chain: 1GWX, 1M2Z, 3GWX
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel tricyclic-alpha-alkyloxyphenylpropionic acids: dual PPARalpha/gamma agonists with hypolipidemic and antidiabetic activity., Sauerberg P, Pettersson I, Jeppesen L, Bury PS, Mogensen JP, Wassermann K, Brand CL, Sturis J, Woldike HF, Fleckner J, Andersen AS, Mortensen SB, Svensson LA, Rasmussen HB, Lehmann SV, Polivka Z, Sindelar K, Panajotova V, Ynddal L, Wulff EM, J Med Chem 2002 Feb 14;45(4):789-804. PMID:11831892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1knu.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 1KNU
  • CSU: Contacts of Structural Units for 1KNU
  • Likely Quarternary Molecular Structure file(s) for 1KNU
  • Structure Factors (229 Kb)
  • Retrieve 1KNU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KNU from S2C, [Save to disk]
  • Re-refined 1knu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1KNU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KNU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KNU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1knua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1knub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1knu_B] [1knu_A] [1knu]
  • SWISS-PROT database: [P37231]
  • Domain organization of [PPARG_HUMAN] by SWISSPFAM
  • Domain found in 1KNU: [HOLI ] by SMART
    • Other resources with information on 1KNU
  • Community annotation for 1KNU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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