3GWX Transcription Regulation date Apr 26, 1999
title Molecular Recognition Of Fatty Acids By Peroxisome Proliferator-Activated Receptors
authors H.E.Xu, M.H.Lambert, V.G.Montana, D.J.Parks, S.G.Blanchard, P.J.Brown, D.D.Sternbach, J.M.Lehmann, G.B.Wisely, T.M.Willson, S.A.Kliewer, M.V.Milburn
compound source
Molecule: Protein (Peroxisome Proliferator Activated Receptor (Ppar-Delta));
Chain: A, B
Fragment: Ligand Biding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppard
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De30)
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.301
length a length b length c angle alpha angle beta angle gamma
39.379 95.543 96.181 90.00 97.89 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand EPA enzyme
related structures by homologous chain: 1KNU, 1RDT
A, B

Primary referenceMolecular recognition of fatty acids by peroxisome proliferator-activated receptors., Xu HE, Lambert MH, Montana VG, Parks DJ, Blanchard SG, Brown PJ, Sternbach DD, Lehmann JM, Wisely GB, Willson TM, Kliewer SA, Milburn MV, Mol Cell 1999 Mar;3(3):397-403. PMID:10198642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3gwx.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3GWX
  • CSU: Contacts of Structural Units for 3GWX
  • Likely Quarternary Molecular Structure file(s) for 3GWX
  • Structure Factors (262 Kb)
  • Retrieve 3GWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GWX from S2C, [Save to disk]
  • Re-refined 3gwx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GWX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GWX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3gwxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3gwxb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gwx_A] [3gwx_B] [3gwx]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 3GWX: [HOLI ] by SMART
  • Other resources with information on 3GWX
  • Community annotation for 3GWX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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