3GWX	Transcription Regulation	date	Apr 26, 1999
title	Molecular Recognition Of Fatty Acids By Peroxisome Proliferator-Activated Receptors
authors	H.E.Xu, M.H.Lambert, V.G.Montana, D.J.Parks, S.G.Blanchard, P.J.Brown, D.D.Sternbach, J.M.Lehmann, G.B.Wisely, T.M.Willson, S.A.Kliewer, M.V.Milburn
compound		source
Molecule: Protein (Peroxisome Proliferator Activated Receptor (Ppar-Delta)); Chain: A, B Fragment: Ligand Biding Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppard Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De30)
symmetry	Space Group: P 1 21 1	R_factor 0.242 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.379 95.543 96.181 90.00 97.89 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	EPA	enzyme
related structures	by homologous chain: 1KNU, 1RDT
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular recognition of fatty acids by peroxisome proliferator-activated receptors., Xu HE, Lambert MH, Montana VG, Parks DJ, Blanchard SG, Brown PJ, Sternbach DD, Lehmann JM, Wisely GB, Willson TM, Kliewer SA, Milburn MV, Mol Cell 1999 Mar;3(3):397-403. PMID:10198642

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (3gwx.pdb1.gz) 92 Kb LPC: Ligand-Protein Contacts for 3GWX CSU: Contacts of Structural Units for 3GWX Likely Quarternary Molecular Structure file(s) for 3GWX Structure Factors (262 Kb) Retrieve 3GWX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GWX from S2C, [Save to disk] Re-refined 3gwx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GWX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GWX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GWX, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3gwxa_, region A [Jmol] [rasmolscript] [script source]     - Domain d3gwxb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gwx_A] [3gwx_B] [3gwx] SWISS-PROT database: [Q03181] Domain organization of [PPARD_HUMAN] by SWISSPFAM Domain found in 3GWX: [HOLI ] by SMART

Other resources with information on 3GWX

Community annotation for 3GWX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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