1M4M Apoptosis date Jul 03, 2002
title Mouse Survivin
authors S.W.Muchmore, J.Chen, C.Jakob, D.Zakula, E.D.Matayoshi, W.Wu, H.Zh S.C.Ng, D.C.Altieri
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 5
Chain: A
Synonym: Apoptosis Inhibitor Survivin, Apoptosis Inhibitor
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 61 2 2
R_factor 0.243 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.430 41.430 291.340 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand ZN enzyme
related structures by homologous chain: 1E31, 1XOX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and mutagenic analysis of the inhibitor-of-apoptosis protein survivin., Muchmore SW, Chen J, Jakob C, Zakula D, Matayoshi ED, Wu W, Zhang H, Li F, Ng SC, Altieri DC, Mol Cell 2000 Jul;6(1):173-82. PMID:10949038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1m4m.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (1m4m.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (1m4m.pdb3.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1M4M
  • CSU: Contacts of Structural Units for 1M4M
  • Likely Quarternary Molecular Structure file(s) for 1M4M
  • Retrieve 1M4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M4M from S2C, [Save to disk]
  • View 1M4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M4M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M4M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m4ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m4m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m4m_A] [1m4m]
  • SWISS-PROT database: [O70201]
  • Domain organization of [BIRC5_MOUSE] by SWISSPFAM
  • Domain found in 1M4M: [BIR ] by SMART
  • Other resources with information on 1M4M
  • Community annotation for 1M4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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