1M62 Chaperone date Jul 11, 2002
title Solution Structure Of The Bag Domain From Bag4sodd
authors K.Briknarova, S.Takayama, S.Homma, K.Baker, E.Cabezas, D.W.Hoyt, Z.Li, A.C.Satterthwait, K.R.Ely
compound source
Molecule: Bag-Family Molecular Chaperone Regulator-4
Chain: A
Fragment: Bag Domain (Residues 371-457)
Synonym: Silencer Of Death Domains
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bag4sodd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
methodSolution NMR
related structures by homologous chain: 1M7K

Primary referenceBAG4/SODD protein contains a short BAG domain., Briknarova K, Takayama S, Homma S, Baker K, Cabezas E, Hoyt DW, Li Z, Satterthwait AC, Ely KR, J Biol Chem 2002 Aug 23;277(34):31172-8. PMID:12058034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1M62
  • Retrieve 1M62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M62 from S2C, [Save to disk]
  • View 1M62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M62
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M62, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m62a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m62 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m62] [1m62_A]
  • SWISS-PROT database: [O95429]
  • Domain organization of [BAG4_HUMAN] by SWISSPFAM
  • Domain found in 1M62: [BAG ] by SMART
  • Other resources with information on 1M62
  • Community annotation for 1M62 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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