1M7K Chaperone date Jul 22, 2002
title Solution Structure Of The Sodd Bag Domain
authors C.Brockmann, D.Leitner, D.Labudde, A.Diehl, V.Sievert, K.Buessow, H.Oschkinat
compound source
Molecule: Silencer Of Death Domains
Chain: A
Fragment: Residues 358-456
Synonym: Bag-Family Molecular Chaperone Regulator-4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
methodSolution NMR
related structures by homologous chain: 1M62
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the SODD BAG domain reveals additional electrostatic interactions in the HSP70 complexes of SODD subfamily BAG domains., Brockmann C, Leitner D, Labudde D, Diehl A, Sievert V, Bussow K, Kuhne R, Oschkinat H, FEBS Lett 2004 Jan 30;558(1-3):101-6. PMID:14759524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1M7K
  • Retrieve 1M7K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M7K from S2C, [Save to disk]
  • View 1M7K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M7K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M7K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m7ka_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m7k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m7k_A] [1m7k]
  • SWISS-PROT database: [O95429]
  • Domain organization of [BAG4_HUMAN] by SWISSPFAM
  • Domain found in 1M7K: [BAG ] by SMART
  • Other resources with information on 1M7K
  • Community annotation for 1M7K at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science