1M6D	Hydrolase	date	Jul 15, 2002
title	Crystal Structure Of Human Cathepsin F
authors	J.R.Somoza, J.T.Palmer, J.D.Ho
compound		source
Molecule: Cathepsin F Chain: A, B Synonym: Catsf Ec: 3.4.22.41 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Catf Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Gs115 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppic9
symmetry	Space Group: P 21 21 2	R_factor 0.195 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.250 103.260 58.650 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	MYP	enzyme	Hydrolase E.C.3.4.22.41 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The crystal structure of human cathepsin F and its implications for the development of novel immunomodulators., Somoza JR, Palmer JT, Ho JD, J Mol Biol 2002 Sep 20;322(3):559-68. PMID:12225749

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1m6d.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 1M6D CSU: Contacts of Structural Units for 1M6D Likely Quarternary Molecular Structure file(s) for 1M6D Structure Factors (340 Kb) Retrieve 1M6D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M6D from S2C, [Save to disk] Re-refined 1m6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M6D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M6D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M6D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m6da_, region A [Jmol] [rasmolscript] [script source]     - Domain d1m6db_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m6d_B] [1m6d_A] [1m6d] SWISS-PROT database: [Q9UBX1] Domain organization of [CATF_HUMAN] by SWISSPFAM Domain found in 1M6D: [Pept_C1 ] by SMART

Other resources with information on 1M6D

Community annotation for 1M6D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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