1M90	Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit	date
authors	Hansen, J.L., Schmeing, T.M., Moore, P.B., Steitz, T.A.
compound		source
symmetry		R_factor R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.80
ligand	ACA, CD, CL, K, MG, NA, PHA, SPS	enzyme
related structures	by homologous chain: 1JJ2, 1QVG, 1YIT, 1YJW
Gene Ontology	Chain Function Process Component 1 2 3 4 C D E F G H ribonuclease P activity I J K L M N O P Q R S T U V W X Y Z
Primary reference	Structural insights into peptide bond formation., Hansen JL, Schmeing TM, Moore PB, Steitz TA, Proc Natl Acad Sci U S A 2002 Sep 3;99(18):11670-5. PMID:12185246

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1999 Kb) [Save to disk] Biological Unit Coordinates (1m90.pdb1.gz) 1962 Kb LPC: Ligand-Protein Contacts for 1M90 CSU: Contacts of Structural Units for 1M90 Likely Quarternary Molecular Structure file(s) for 1M90 Structure Factors (5971 Kb) Retrieve 1M90 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M90 from S2C, [Save to disk] Re-refined 1m90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M90 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M90

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M90, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m901_, region 1 [Jmol] [rasmolscript] [script source]     - Domain d1m902_, region 2 [Jmol] [rasmolscript] [script source]     - Domain d1m903_, region 3 [Jmol] [rasmolscript] [script source]     - Domain d1m904_, region 4 [Jmol] [rasmolscript] [script source]     - Domain d1m90c2, region C:1-90 [Jmol] [rasmolscript] [script source]     - Domain d1m90c1, region C:91-237 [Jmol] [rasmolscript] [script source]     - Domain d1m90d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1m90e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1m90f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1m90g1, region G:1-79 [Jmol] [rasmolscript] [script source]     - Domain d1m90g2, region G:80-172 [Jmol] [rasmolscript] [script source]     - Domain d1m90h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1m90i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1m90j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1m90k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1m90l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1m90m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1m90n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1m90o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1m90p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1m90q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1m90r_, region R [Jmol] [rasmolscript] [script source]     - Domain d1m90s_, region S [Jmol] [rasmolscript] [script source]     - Domain d1m90t_, region T [Jmol] [rasmolscript] [script source]     - Domain d1m90u_, region U [Jmol] [rasmolscript] [script source]     - Domain d1m90v_, region V [Jmol] [rasmolscript] [script source]     - Domain d1m90w_, region W [Jmol] [rasmolscript] [script source]     - Domain d1m90x_, region X [Jmol] [rasmolscript] [script source]     - Domain d1m90y_, region Y [Jmol] [rasmolscript] [script source]     - Domain d1m90z_, region Z [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m90_H] [1m90_Z] [1m90_V] [1m90_N] [1m90_K] [1m90_L] [1m90_J] [1m90_P] [1m90_O] [1m90_Y] [1m90_R] [1m90_M] [1m90_4] [1m90_T] [1m90_2] [1m90_Q] [1m90_D] [1m90_U] [1m90_B] [1m90_3] [1m90_A] [1m90_5] [1m90] [1m90_I] [1m90_X] [1m90_E] [1m90_1] [1m90_G] [1m90_W] [1m90_C] [1m90_F] [1m90_S] SWISS-PROT database: [P60617] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825] Domain organization of [RL10_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM Domains found in 1M90: [HhH1] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

Other resources with information on 1M90

Community annotation for 1M90 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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