1MBO Oxygen Storage date Aug 27, 1981
title Structure And Refinement Of Oxymyoglobin At 1.6 Angstroms Re
authors S.E.V.Phillips
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
symmetry Space Group: P 1 21 1
length a length b length c angle alpha angle beta angle gamma
64.530 31.050 34.930 90.00 105.79 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand HEM, OXY, SO4 enzyme
note 1MBO (Molecule of the Month:pdb1)
related structures by homologous chain: 1MYZ, 1MZ0

Primary referenceStructure and refinement of oxymyoglobin at 1.6 A resolution., Phillips SE, J Mol Biol 1980 Oct 5;142(4):531-54. PMID:7463482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1mbo.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1MBO
  • CSU: Contacts of Structural Units for 1MBO
  • Likely Quarternary Molecular Structure file(s) for 1MBO
  • Structure Factors (202 Kb)
  • Retrieve 1MBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MBO from S2C, [Save to disk]
  • Re-refined 1mbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MBO, from MSDmotif at EBI
  • Genome occurence of 1MBO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mbo__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1mbo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mbo] [1mbo_A]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
  • Other resources with information on 1MBO
  • Community annotation for 1MBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1MBO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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