1MYZ Oxygen Storage Transport date Oct 04, 2002
title Co Complex Of Myoglobin Mb-Yqr At Rt Solved From Laue Data.
authors D.Bourgeois, B.Vallone, F.Schotte, A.Arcovito, A.E.Miele, G.Sciar M.Wulff, P.Anfinrud, M.Brunori
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc91
symmetry Space Group: P 6
R_factor 0.166 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.200 91.200 45.712 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand CMO, HEM, SO4 enzyme
related structures by homologous chain: 1MBO, 1N9X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComplex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography., Bourgeois D, Vallone B, Schotte F, Arcovito A, Miele AE, Sciara G, Wulff M, Anfinrud P, Brunori M, Proc Natl Acad Sci U S A 2003 Jul 22;100(15):8704-9. Epub 2003 Jul 7. PMID:12847289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1myz.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1MYZ
  • CSU: Contacts of Structural Units for 1MYZ
  • Likely Quarternary Molecular Structure file(s) for 1MYZ
  • Structure Factors (244 Kb)
  • Retrieve 1MYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MYZ from S2C, [Save to disk]
  • Re-refined 1myz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MYZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MYZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1myza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1myz_A] [1myz]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
  • Other resources with information on 1MYZ
  • Community annotation for 1MYZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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