1MDM	Transcription Dna	date	Aug 07, 2002
title	Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5 Bound
authors	C.W.Garvie, M.A.Pufall, B.J.Graves, C.Wolberger
compound		source
Molecule: Pax5ets Binding Site On The Mb-1 Promoter Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthesised By The Phosphoramidite Method
Molecule: Pax5ets Binding Site On The Mb-1 Promoter Chain: D Engineered: Yes		Synthetic: Yes Other_details: Synthesised By The Phosphoramidite Method
Molecule: Paired Box Protein Pax-5 Chain: A Fragment: Paired Dna-Binding Domain, Residues 1-149 Synonym: B-Cell Specific Transcription Factor, Bsap Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pax5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: C-Ets-1 Protein Chain: B Fragment: Inhibited Ets Dna-Binding Domain, Residues 280-44 Synonym: P54 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Ets-1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 2	R_factor 0.259 R_Free 0.310
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.270 171.230 44.710 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
related structures	by homologous chain: 1K7A, 1PDN, 1R36
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships., Garvie CW, Pufall MA, Graves BJ, Wolberger C, J Biol Chem 2002 Nov 22;277(47):45529-36. Epub 2002 Sep 6. PMID:12221090

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1mdm.pdb1.gz) 56 Kb CSU: Contacts of Structural Units for 1MDM Likely Quarternary Molecular Structure file(s) for 1MDM Structure Factors (148 Kb) Retrieve 1MDM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MDM from S2C, [Save to disk] Re-refined 1mdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MDM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MDM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MDM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mdma1, region A:19-81 [Jmol] [rasmolscript] [script source]     - Domain d1mdma2, region A:82-142 [Jmol] [rasmolscript] [script source]     - Domain d1mdmb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mdm] [1mdm_B] [1mdm_D] [1mdm_C] [1mdm_A] SWISS-PROT database: [P27577] [Q02548] Domain organization of [ETS1_MOUSE] [PAX5_HUMAN] by SWISSPFAM Domains found in 1MDM: [ETS] [PAX ] by SMART

Other resources with information on 1MDM

Community annotation for 1MDM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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